PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010093647.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family HSF
Protein Properties Length: 406aa    MW: 44781.2 Da    PI: 6.3654
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010093647.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind102.82.9e-32101402103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT...................... CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks...................... 74 
                     Fl+k+y+++ed++++++isw+e g+sfvv+++ +fa+++LpkyFkh+nf+SFvRQLn+Y+  ++  +    +                       
  XP_010093647.1  10 FLMKTYQLVEDPSTNDVISWNEAGTSFVVWKTADFARDLLPKYFKHNNFSSFVRQLNTYDGANLVCPGVLCRGvvigegfelegsligeedegnv 104
                     9***********************************************************99999988764448999*******99999998888 PP

                     .....X..TTSEEEEESXXXXXXXXXXXXXXXXXXX CS
    HSF_DNA-bind  75 .....k..ekiweFkhksFkkgkkellekikrkkse 103
                          k  ++ weF++++F++g+kell++i+r+k++
  XP_010093647.1 105 ikgfrKvvPDKWEFANENFRRGQKELLSEIRRRKTA 140
                     776651669************************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004153.4E-476137IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.72E-29775IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.3E-35768IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.9E-161033IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.9E-2910137IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.9E-164860IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.9E-166173IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.72E-29104137IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.3E-35107137IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009408Biological Processresponse to heat
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MAQRSVPAPF LMKTYQLVED PSTNDVISWN EAGTSFVVWK TADFARDLLP KYFKHNNFSS  60
FVRQLNTYDG ANLVCPGVLC RGVVIGEGFE LEGSLIGEED EGNVIKGFRK VVPDKWEFAN  120
ENFRRGQKEL LSEIRRRKTA TASTAQAKPA GEGSSTPSNS GEDLGSTSTS SPESKNPGSV  180
ETAAVTVQFA DLSDENEKLK KDNEVLTSKL AQTKKQCDEL ITFLTKYMKV GPDQINRIMR  240
QGINCGSTRG GEDRDDDENE ADDHDDGDDG EEEGLKLFGV WLRGKDHNEK DQKNKKKRTR  300
GEETGFTGPH AKKMKGVDFH APPLMQSGKH LNHHSLSSLF PVHDHQAPTS ILASIFDTSR  360
LIGKLSSSRV GIGVVRLPTP PDEGILISKN SKLPMAITFL STLRLE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-20514216125Heat shock factor protein 1
5d5u_B4e-20513925131Heat shock factor protein 1
5d5v_B4e-20513925131Heat shock factor protein 1
5d5v_D4e-20513925131Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010093647.10.0Heat shock factor protein HSF24
SwissprotP223351e-101HSF24_SOLPE; Heat shock factor protein HSF24
TrEMBLW9R2210.0W9R221_9R
STRINGVIT_07s0031g00670.t011e-125(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71143247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.12e-83heat shock factor 4